madson a. de luna-aragão / virtual development lab
a virtual lab dedicated to building toolseach project here is an experiment at the boundary of artificial intelligence, autonomous systems, bioinformatics, and production software.
centralized portal for biological data integration, search, and exploration across multiple omics layers.
machine learning classifier for antimicrobial peptide identification from amino acid sequences.
computational pipeline to mine proteomes for encrypted antimicrobial peptides that exist latently within larger protein sequences.
AI-guided AMP discovery pipeline with ESM-2 classifiers, sequence generation, and ESMFold structure prediction.
builds flat lipid bilayer membranes from all-atom PDB templates and places proteins or peptides on or inside them for MD preparation.
all public repositories, scripts, and tools developed for bioinformatics research and software projects.